28.Carlos-Shanley C, Guerra T, Hahn D. (2021). Draft genomes of non-nitrogen-fixing Frankia strains. J Genomics. 9:68-75. Link
27.Chevrette MG, Himes B, Carlos-Shanley C. Nutrient availability shifts the biosynthetic potential of soil-derived microbial communities. Preprint in
26. Mays Z, Hunter A, Glass LC, Carlos-Shanley C.(2021). The effects of captivity on the microbiome of the endangered Comal Springs riffle beetle (Heterelmis comalensis). FEMS Microbiol. Lett.. fnab121. Link
25. Ohashi, K., Hataya, S., Nakata, A., Matsumoto, K., Kato, N., Sato, W., Carlos-Shanley, C., Beebe, E. T., Currie, C. R., Fox, B. G., & Takasuka, T. E. (2021). Mannose- and Mannobiose-Specific Responses of the Insect-Associated Cellulolytic Bacterium Streptomyces sp. Strain SirexAA-E. Applied and Environmental Microbiology, 87(14), e0271920. Link
24. Arango RA, Schoville SD, Currie CR, Carlos-Shanley C. (2021) Experimental warming reduces gut prokaryotic diversity, survival and thermal tolerance of the eastern subterranean termite, Reticulitermes flavipes (Kollar). Front. Microbiol. 12:632715. Link
23. Barcoto MO, Carlos-Shanley C, Fan H et al. (2020) Fungus-growing insects host a distinctive microbiota apparently adapted to the fungiculture environment. Sci. Rep. 10:12384. Link
22. Khadempour L, Fan H, Keefover-Ring K, Carlos C, Nagamoto NS, Dam MA, Pupo MT, Currie CR. (2020). Metagenomics reveals diet-specific specialization in fungus gardens of grass- and dicot-cutter ants. Front. Microbiol. 11:570770. Link
21. Chevrette MG, Carlos-Shanley C, Louie KB, Bowen BP, Northen TR, Currie CR. (2019). Taxonomic and Metabolic Incongruence in the Ancient Genus Streptomyces. Front. Microbiol. 10:2170. Link
20. Hillel AT, Tang SS, Carlos C, Skarlupka JH, Gowda M, Yin LX, Motz K, Currie CR, Suen G, Thibeault SL. (2019). Laryngotracheal Microbiota in Adult Laryngotracheal Stenosis. mSphere 4: e00211-19. Link
19. Chevrette MG, Carlson CM, Ortega HE, Thomas C, Ananiev GE, Barns KJ, Book AJ, Cagnazzo J, Carlos C, et al. (2019). The antimicrobial potential of Streptomyces from insect microbiomes. Nat Commun 10:516. Link
18. Carlos C, Fan H, Currie CR. (2018). Substrate shift reveals roles for members of bacterial consortia in degradation of plant cell wall polymers. Front. Microbiol. 9:364. Link
17. Stoppe NC, Silva JS, Carlos C, Sato MIZ, Saraiva AM, Ottoboni LMM, et al. (2018). Worldwide phylogenetic group patterns of Escherichia coli from commensal human and wastewater treatment plant isolates. Frontiers in Microbiology 8:2512. Link
16. Pereira LB, Palermo BRZ, Carlos C, Ottoboni LMM. (2017) Diversity and antibacterial activity of the bacterial communities associated with Brazilian coral species. FEMS Microbiology Letters 364: fnx164. Link
15. Gontang EA, Aylward FO, Carlos C, del Rio TG, Chovatia M, Fern A, Lo CC, Malfatti SA, Tringe SG, Currie CR, Kolter R. (2017) Major shifts in microbial diversity and community composition across gut sections of a tropical cockroach. PLoS ONE 12: e0177189. Link
14. Carlos C, Pereira LB, Ottoboni LMM. (2016) Comparative genomics of Paracoccus sp. SM22M-07 isolated from coral mucus: Insights into bacteria-host interactions. Current Genetics 63:509-518. Link
13. Lewin GR, Carlos C, Chevrette MG, Horn HA, McDonald BM, Stankey RJ, Fox BG, et al. (2016) Evolution and ecology of Actinobacteria and their bioenergy applications. Annual Review of Microbiology 70:235-254. Link
12. Palermo BRZ, Castro DBA, Pereira LB, Caus ACG, Magalhaes BL, Carlos C, et al. (2016) Draft genome sequence of Kocuria sp. SM24M-10 isolated from coral mucus. Genomics Data 7:121123. Link
11. Castro DBA, Pereira LB, Silva MVN, Silva BP, Palermo BRZ, Carlos C, et al. (2015) High-quality draft genome sequence of Kocuria marina SO9-6, an actinobacterium isolated from a copper mine. Genomics Data 5:34-35. Link
10. Stoppe NC, Silva JS, Torres TT, Carlos C, Hachich EM, Sato MI, Saraiva AM, Ottoboni LMM. (2014) Clustering of water bodies in unpolluted and polluted environments based on Escherichia coli phylogroup abundance using a simple interaction database. Genetics and molecular biology 37:694-701. Link
9. Carlos C, Castro DBA, Ottoboni LMM. (2014) Comparative metagenomic analysis of coral microbial communities using a reference–independent approach. PLoS ONE 9: e111626. Link
8. Carlos C, Torres TT, Ottoboni LMM. (2013) Bacterial communities and species-specific associations with the mucus of Brazilian coral species. Scientific Reports 3: 1624. Link
7. Carlos C, Alexandrino F, Stoppe NC, Sato MIZ, Ottoboni LMM. (2012) Use of Escherichia coli BOX-PCR fingerprints to identify sources of fecal contamination of water bodies in the State of São Paulo, Brazil. Journal of Environmental Management 93: 38-43. Link
6. Carlos C, Alexandrino F, Vieira MAM, Stoppe NC, Sato MIZ, Gomes TAT, Ottoboni LMM. (2011) Prevalence of virulence factors isolated from healthy animals and water sources in Brazil. Journal of Water and Health 9: 138. Link
5. Maturana VG, Pace F, Carlos C, Pires MM, Campos TA, Nakazato G, Stheling EG, Logue CM, Nolan LK, Silveira WD. (2011) Subpathotypes of Avian Pathogenic Escherichia coli (APEC) Exist as Defined by their Syndromes and Virulence Traits. The Open Microbiology Journal 5: 55-64. Link
4. Carlos C, Maretto DA, Poppi RJ, Sato MIZ, Ottoboni LMM. (2011) Fourier transform infrared microspectroscopy as a bacterial source tracking tool to discriminate fecal E. coli strains. Microchemical Journal 99: 15-19. Link
3. Carlos C, Pires MM, Stope NC, Hachich EM, Sato MIZ, Gomes TAT, Amaral LA, Ottoboni LMM. (2010) Escherichia coli phylogenetic group determination and its application in the identification of the major animal source of fecal contamination. BMC Microbiology 10: 161. Link
2. Reis FC, Madureira DJ, Vicentini R, Carlos C, Ferraz LFC, Garcia O, Ottoboni LMM. (2010) Transporter protein genes are differentially expressed in Acidithiobacillus ferrooxidans LR maintained in contact with covellite. World Journal of Microbiology and Biotechnology 11: 2061-2068. Link
1. Carlos C, Reis FC, Vicentini R, Madureira DJ, Ottoboni LMM. (2008) The rus operon genes are differentially regulated when Acidithiobacillus ferrooxidans LR is kept in contact with metal sulfites. Current Microbiology 57: 375-380. Link